PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018622
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 283aa    MW: 30621.1 Da    PI: 9.3136
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018622genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.52.8e-3946148289
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                 +k+++++++hTkv+gR+RR R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a++   + s + sa   s++            
  Cla018622  46 SPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNsLNTSLRRSAT--SISlpsqlrsssyyh 143
                689*****************************************************************966654444444444..222334443334444 PP

        TCP  89 ....k 89 
                     
  Cla018622 144 pgvmG 148
                44441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3750156IPR005333Transcription factor, TCP
PROSITE profilePS5136927.42752106IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEAGNDQLQY HQNHRSTTSF PLQLLEKKEY DNNPQPPLDI ISKKPSPKRT STKDRHTKVD  60
GRGRRTRMPA LCAARVFQLT RELGHKSDGE TIEWLLQQAE PAVIAATGTG TIPANFNSLN  120
TSLRRSATSI SLPSQLRSSS YYHPGVMGFN SEAITNNMTQ PKEDHHYLHQ STTGLIPTTI  180
PANFWMLSDA NNQLLGGGGD SLWRVQSANN QDAALYRLGQ PSGGNNLRLS NNLAAPLTLL  240
PGKPLSLGPT AGGGRGTMND DGHLNIYAAQ DPPHGAAPDT GVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440976.11e-155PREDICTED: transcription factor TCP15-like
SwissprotQ9C9L23e-49TCP15_ARATH; Transcription factor TCP15
TrEMBLA0A0A0LSM31e-151A0A0A0LSM3_CUCSA; Uncharacterized protein
STRINGPOPTR_0004s04600.14e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.16e-41TCP family protein